Welcome to the GDC Documentation!

This project provides tools and pipelines for interacting with the Genomic Data Commons (GDC). It is designed to run efficiently on high-performance clusters like the UMN MSI Agate cluster.

Contents:

• Installation
  • Stable release
  • From Source (Development)
  • External Dependencies
  • Configuration & Troubleshooting
• Genomics
  • Standard Procedure
  • Technical Implementation
• Usage
  • Workflow Overview
  • Running the Pipeline
  • Command-Line Flags
  • High-Performance Computing (SLURM)

Indices and tables

• Index

• Module Index

• Search Page